| R1: Lane-Level Summary statistics |
|---|
| Samples | Read Count | Mean Read Length | Mean Quality Score | %bps Above PHRED 25.0 |
|---|
| RAW | TRIMMED | %diff | RAW | TRIMMED | %diff | RAW | TRIMMED | %diff | RAW | TRIMMED | %diff |
|---|
| S1aR1 | 2714002.0 | 0.9699 | 2652719.0 | 0.9673 | 2.258 | -0.8635 | 75.5266 | -0.8842 | 72.9465 | 0.8264 | 3.4162 | -0.8305 | 34.628 | 0.7769 | 34.947 | 0.8378 | 0.921 | -0.4664 | 95.9133 | 0.7388 | 97.3083 | 0.8036 | 1.4545 | -0.4552 |
| S1bR1 | 2651135.0 | 0.8875 | 2591078.0 | 0.8864 | 2.2653 | -0.8576 | 75.5257 | -0.9502 | 72.995 | 1.0496 | 3.3507 | -1.0455 | 34.651 | 1.0913 | 34.9615 | 1.0738 | 0.8962 | -1.1380 | 96.027 | 1.1260 | 97.3812 | 1.1066 | 1.4103 | -1.1722 |
| S1cR1 | 2736835.0 | 0.9998 | 2674899.0 | 0.9964 | 2.2631 | -0.8594 | 75.5253 | -0.9795 | 73.0132 | 1.1334 | 3.3262 | -1.1259 | 34.6532 | 1.1214 | 34.9638 | 1.1112 | 0.8963 | -1.1352 | 96.0103 | 1.0691 | 97.3692 | 1.0567 | 1.4154 | -1.0895 |
| S1dR1 | 2646139.0 | 0.8810 | 2592726.0 | 0.8886 | 2.0185 | -1.0596 | 75.5261 | -0.9209 | 72.9023 | 0.6230 | 3.474 | -0.6408 | 34.6174 | 0.6319 | 34.9338 | 0.6230 | 0.9139 | -0.6587 | 95.9036 | 0.7058 | 97.2842 | 0.7034 | 1.4395 | -0.6985 |
| S2aR1 | 1272836.0 | -0.9173 | 1214099.0 | -0.9213 | 4.6147 | 1.0661 | 75.5519 | 0.9704 | 72.5567 | -0.9675 | 3.9645 | 0.9690 | 34.4957 | -1.0318 | 34.8357 | -0.9733 | 0.9854 | 1.2774 | 95.3783 | -1.0831 | 96.8694 | -1.0204 | 1.5633 | 1.3097 |
| S2bR1 | 1242871.0 | -0.9566 | 1185329.0 | -0.9591 | 4.6298 | 1.0784 | 75.5498 | 0.8164 | 72.5874 | -0.8262 | 3.9211 | 0.8265 | 34.5182 | -0.7242 | 34.8465 | -0.7975 | 0.9512 | 0.3513 | 95.4932 | -0.6918 | 96.9282 | -0.7761 | 1.5027 | 0.3267 |
| S2cR1 | 1282965.0 | -0.9041 | 1223324.0 | -0.9092 | 4.6487 | 1.0939 | 75.5515 | 0.9410 | 72.6414 | -0.5777 | 3.8519 | 0.5994 | 34.5272 | -0.6012 | 34.8564 | -0.6364 | 0.9535 | 0.4136 | 95.5042 | -0.6544 | 96.9482 | -0.6930 | 1.512 | 0.4775 |
| S2dR1 | 1240103.0 | -0.9602 | 1192938.0 | -0.9491 | 3.8033 | 0.4017 | 75.5524 | 1.0070 | 72.4929 | -1.2611 | 4.0495 | 1.2479 | 34.4787 | -1.2642 | 34.8194 | -1.2385 | 0.9883 | 1.3559 | 95.3409 | -1.2105 | 96.8308 | -1.1809 | 1.5628 | 1.3015 |
| R1: Sample-Level Summary statistics |
|---|
| Samples | Read Count | Mean Read Length | Mean Quality Score | %bps Above PHRED 25.0 |
|---|
| RAW | TRIMMED | %diff | RAW | TRIMMED | %diff | RAW | TRIMMED | %diff | RAW | TRIMMED | %diff |
|---|
| S1 | 10748111 | 10511422 | 2.2021 | 75.5259 | 72.9646 | 3.3914 | 34.6375 | 34.9516 | 0.9069 | 95.9637 | 97.3359 | 1.4299 |
| S2 | 5038775 | 4815690 | 4.4274 | 75.5514 | 72.5700 | 3.9463 | 34.5051 | 34.8396 | 0.9694 | 95.4295 | 96.8943 | 1.5350 |
| R2: Lane-Level Summary statistics |
|---|
| Samples | Read Count | Mean Read Length | Mean Quality Score | %bps Above PHRED 25.0 |
|---|
| RAW | TRIMMED | %diff | RAW | TRIMMED | %diff | RAW | TRIMMED | %diff | RAW | TRIMMED | %diff |
|---|
| S1aR2 | 2714002.0 | 0.9699 | 2652719.0 | 0.9673 | 2.258 | -0.8635 | 75.3767 | -1.0445 | 71.3934 | 0.9550 | 5.2845 | -0.9563 | 33.6311 | 0.9470 | 34.4897 | 0.9547 | 2.5531 | -0.9338 | 90.9035 | 0.9488 | 94.8154 | 0.9586 | 4.3034 | -0.9333 |
| S1bR2 | 2651135.0 | 0.8875 | 2591078.0 | 0.8864 | 2.2653 | -0.8576 | 75.3778 | -0.9742 | 71.343 | 0.9179 | 5.3528 | -0.9188 | 33.6104 | 0.9233 | 34.4783 | 0.9323 | 2.5822 | -0.9100 | 90.8053 | 0.9250 | 94.7547 | 0.9334 | 4.3494 | -0.9132 |
| S1cR2 | 2736835.0 | 0.9998 | 2674899.0 | 0.9964 | 2.2631 | -0.8594 | 75.3817 | -0.7248 | 71.4621 | 1.0056 | 5.1997 | -1.0029 | 33.6495 | 0.9680 | 34.5033 | 0.9814 | 2.5373 | -0.9467 | 90.9636 | 0.9634 | 94.8579 | 0.9763 | 4.2811 | -0.9431 |
| S1dR2 | 2646139.0 | 0.8810 | 2592726.0 | 0.8886 | 2.0185 | -1.0596 | 75.3788 | -0.9102 | 71.2536 | 0.8520 | 5.4727 | -0.8529 | 33.5918 | 0.9021 | 34.4441 | 0.8651 | 2.5373 | -0.9467 | 90.7167 | 0.9035 | 94.591 | 0.8653 | 4.2708 | -0.9476 |
| S2aR2 | 1272836.0 | -0.9173 | 1214099.0 | -0.9213 | 4.6147 | 1.0661 | 75.4082 | 0.9694 | 68.8842 | -0.8927 | 8.6515 | 0.8938 | 31.9878 | -0.9287 | 33.5456 | -0.9006 | 4.87 | 0.9618 | 83.1738 | -0.9261 | 90.3553 | -0.8954 | 8.6343 | 0.9611 |
| S2bR2 | 1242871.0 | -0.9566 | 1185329.0 | -0.9591 | 4.6298 | 1.0784 | 75.4007 | 0.4899 | 68.8232 | -0.9377 | 8.7233 | 0.9333 | 31.9649 | -0.9548 | 33.5349 | -0.9217 | 4.9117 | 0.9959 | 83.0633 | -0.9529 | 90.2944 | -0.9207 | 8.7055 | 0.9922 |
| S2cR2 | 1282965.0 | -0.9041 | 1223324.0 | -0.9092 | 4.6487 | 1.0939 | 75.4117 | 1.1932 | 68.9639 | -0.8340 | 8.5502 | 0.8381 | 32.0153 | -0.8973 | 33.5702 | -0.8523 | 4.8568 | 0.9510 | 83.2653 | -0.9039 | 90.4442 | -0.8584 | 8.6217 | 0.9555 |
| S2dR2 | 1240103.0 | -0.9602 | 1192938.0 | -0.9491 | 3.8033 | 0.4017 | 75.4087 | 1.0014 | 68.6488 | -1.0661 | 8.9643 | 1.0657 | 31.9607 | -0.9596 | 33.4651 | -1.0588 | 4.707 | 0.8284 | 83.043 | -0.9578 | 89.9615 | -1.0591 | 8.3312 | 0.8285 |
| R2: Sample-Level Summary statistics |
|---|
| Samples | Read Count | Mean Read Length | Mean Quality Score | %bps Above PHRED 25.0 |
|---|
| RAW | TRIMMED | %diff | RAW | TRIMMED | %diff | RAW | TRIMMED | %diff | RAW | TRIMMED | %diff |
|---|
| S1 | 10748111 | 10511422 | 2.2021 | 75.3788 | 71.3640 | 5.3262 | 33.6210 | 34.4791 | 2.5523 | 90.8486 | 94.7560 | 4.3010 |
| S2 | 5038775 | 4815690 | 4.4274 | 75.4073 | 68.8311 | 8.7209 | 31.9825 | 33.5293 | 4.8366 | 83.1377 | 90.2657 | 8.5737 |
| R1: Experiment-Level Read Count Statistics(Lane Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 1973360.7500 | 1915889.0000 | 2.9124 |
| SD | 714327.8588 | 712524.9719 | 0.2524 |
| Median | 1964552.0000 | 1907201.0000 | 2.9193 |
| 25th percentile | 1265344.7500 | 1208808.7500 | 4.4680 |
| 75th percentile | 2666851.7500 | 2607724.2500 | 2.2171 |
| R1: Experiment-Level Read Count Statistics (Sample Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 7893443.0000 | 7663556.0000 | 2.9124 |
| SD | 2854668.0000 | 2847866.0000 | 0.2383 |
| Median | 7893443.0000 | 7663556.0000 | 2.9124 |
| 25th percentile | 6466109.0000 | 6239623.0000 | 3.5027 |
| 75th percentile | 9320777.0000 | 9087489.0000 | 2.5029 |
| R2: Experiment-Level Read Count Statistics (Lane Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 1973360.7500 | 1915889.0000 | 2.9124 |
| SD | 714327.8588 | 712524.9719 | 0.2524 |
| Median | 1964552.0000 | 1907201.0000 | 2.9193 |
| 25th percentile | 1265344.7500 | 1208808.7500 | 4.4680 |
| 75th percentile | 2666851.7500 | 2607724.2500 | 2.2171 |
| R2: Experiment-Level Read Count Statistics (Sample Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 7893443.0000 | 7663556.0000 | 2.9124 |
| SD | 2854668.0000 | 2847866.0000 | 0.2383 |
| Median | 7893443.0000 | 7663556.0000 | 2.9124 |
| 25th percentile | 6466109.0000 | 6239623.0000 | 3.5027 |
| 75th percentile | 9320777.0000 | 9087489.0000 | 2.5029 |
| R1: Experiment-Level Read Length Statistics(Lane Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 75.5387 | 72.7669 | 3.6693 |
| SD | 0.0128 | 0.2033 | 1493.8941 |
| Median | 75.5382 | 72.7718 | 3.6622 |
| 25th percentile | 75.5260 | 72.5797 | 3.9010 |
| 75th percentile | 75.5516 | 72.9587 | 3.4320 |
| R1: Experiment-Level Read Length Statistics (Sample Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 75.5387 | 72.7673 | 3.6689 |
| SD | 0.0127 | 0.1973 | 1449.6318 |
| Median | 75.5387 | 72.7673 | 3.6689 |
| 25th percentile | 75.5323 | 72.6686 | 3.7914 |
| 75th percentile | 75.5450 | 72.8659 | 3.5464 |
| R2: Experiment-Level Read Length Statistics (Lane Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 75.3930 | 70.0965 | 7.0252 |
| SD | 0.0146 | 1.2703 | 8586.7772 |
| Median | 75.3912 | 70.1087 | 7.0067 |
| 25th percentile | 75.3786 | 68.8690 | 8.6359 |
| 75th percentile | 75.4083 | 71.3556 | 5.3744 |
| R2: Experiment-Level Read Length Statistics (Sample Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 75.3931 | 70.0975 | 7.0239 |
| SD | 0.0143 | 1.2664 | 8761.3619 |
| Median | 75.3931 | 70.0975 | 7.0239 |
| 25th percentile | 75.3859 | 69.4643 | 7.8550 |
| 75th percentile | 75.4002 | 70.7308 | 6.1929 |
| R1: Experiment-Level Mean (bp) Quality Score Statistics (Lane Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 34.5712 | 34.8955 | 0.9382 |
| SD | 0.0684 | 0.0575 | 15.9851 |
| Median | 34.5723 | 34.8951 | 0.9337 |
| 25th percentile | 34.5126 | 34.8438 | 0.9597 |
| 75th percentile | 34.6337 | 34.9506 | 0.9149 |
| R1: Experiment-Level Mean (bp) Quality Score Statistics (Sample Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 34.5713 | 34.8956 | 0.9381 |
| SD | 0.0662 | 0.0560 | 15.4020 |
| Median | 34.5713 | 34.8956 | 0.9381 |
| 25th percentile | 34.5382 | 34.8676 | 0.9537 |
| 75th percentile | 34.6044 | 34.9236 | 0.9225 |
| R2: Experiment-Level Mean (bp) Quality Score Statistics (Lane Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 32.8014 | 34.0039 | 3.6659 |
| SD | 0.8195 | 0.4760 | 41.9189 |
| Median | 32.8036 | 34.0071 | 3.6691 |
| 25th percentile | 31.9821 | 33.5429 | 4.8804 |
| 75th percentile | 33.6156 | 34.4811 | 2.5749 |
| R2: Experiment-Level Mean (bp) Quality Score Statistics (Sample Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 32.8017 | 34.0042 | 3.6660 |
| SD | 0.8193 | 0.4749 | 42.0340 |
| Median | 32.8017 | 34.0042 | 3.6660 |
| 25th percentile | 32.3921 | 33.7668 | 4.2439 |
| 75th percentile | 33.2114 | 34.2417 | 3.1023 |
| R1: Experiment-Level %bps Above PHRED 25.0 Statistics (Lane Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 95.6963 | 97.1149 | 1.4824 |
| SD | 0.2747 | 0.2251 | 18.0592 |
| Median | 95.7039 | 97.1162 | 1.4757 |
| 25th percentile | 95.4645 | 96.9135 | 1.5179 |
| 75th percentile | 95.9376 | 97.3235 | 1.4447 |
| R1: Experiment-Level %bps Above PHRED 25.0 Statistics (Sample Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 95.6966 | 97.1151 | 1.4823 |
| SD | 0.2671 | 0.2208 | 17.3456 |
| Median | 95.6966 | 97.1151 | 1.4823 |
| 25th percentile | 95.5630 | 97.0047 | 1.5086 |
| 75th percentile | 95.8301 | 97.2255 | 1.4561 |
| R2: Experiment-Level %bps Above PHRED 25.0 Statistics (Lane Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 86.9918 | 92.5093 | 6.3425 |
| SD | 3.8566 | 2.2503 | 41.6501 |
| Median | 86.9910 | 92.5176 | 6.3531 |
| 25th percentile | 83.1462 | 90.3401 | 8.6521 |
| 75th percentile | 90.8299 | 94.7699 | 4.3378 |
| R2: Experiment-Level %bps Above PHRED 25.0 Statistics (Sample Resolution) | | Statistical Value | RAW | TRIMMED | %difference |
| Mean | 86.9931 | 92.5108 | 6.3427 |
| SD | 3.8555 | 2.2452 | 41.7662 |
| Median | 86.9931 | 92.5108 | 6.3427 |
| 25th percentile | 85.0654 | 91.3882 | 7.4329 |
| 75th percentile | 88.9209 | 93.6334 | 5.2997 |