Teaching

Institute Unit Year Course Number Course Name Duration
University of Nebraska-Lincoln Electrical and Computer Engineering 2013-Present ECEN 450/850 Bioinformatics Fall
ECEN 453/853 Computational and Systems Biology Spring
2016-Present ECEN 215 Electronics and Circuits I Fall
2016 ECEN 996 Bayesian Networks Spring
Istanbul Bilgi University Genetics and Bioengineering 2012-2013 BIOE 241 Fundamentals of Biostatistics and Experimental Design Spring
2013 BIOE 346 Microarrays Spring
2012 BIOE 341 Bioinformatics Fall
College of Engineering 2012 ENGR 230 Probability and Random Processes Spring
2011-2012 PHYS 100 Physics I Fall/Spring
2011 ENG 180 Engineering and Sciences Spring
2010 ENG 179 Engineering in Society Fall
Acibadem University Medical School 2010 MED 106 Medical Informatics Spring
Sabanci University Biological Sciences and Bioengineering 2008 BIO 512 Advanced Computational Biology Spring
Yeditepe University Genetics and Bioengineering 2007 GBE 311 Principles of Bioengineering Spring
2006 GBE 313 Experimental Bioengineering Lab Fall
Northeastern University Biology (Graduate Program in Bioinformatics) 2005 BIO G385 Seminar in Bioinformaics Fall
University of Nebraska-Lincoln Electrical and Computer Engineering 2000-2002 ECEN 462/862 Communication Systems Fall
ECEN 464/864 Digital Communication Systems Spring

Presentations

Year Venue Title
2021 Biotech Conference, Bogazici University Omics Data Analysis in Systems Biology
2020 Mini-symposium on AI/machine Learning, Northwestern University Network-based Approaches For Biological Data Analysis
2020 Istanbul Bilgi University, Department of Genetics and Bioengineering Omic Data Analysis Using Network Science
2019 Electrical and Computer Engineering, UNL, Lincoln, NE USA Bioinformatics @ ECE, External Advisory Board Meeting
2019 Northwestern University, Evanston, IL USA Probabilistic Graph Models for Biological Data Analysis Using External Knowledge
2018 Keynote Speaker, UNL Plant Science Retreat Network Analysis of Multiomic Data Using Probabilistic Graph Representations
2014 University of Nebraska Medical Center, Omaha, NE USA Pathway Analysis of Biological Data using Bayesian Networks
2012 Bogazici University, Molecular Biology and Genetics Weekend, Istanbul, Turkey Systems Biology
2012 ITU Biotech, Istanbul, Turkey Bioinformatics
2012 DONE Genetics and Bioinformatics, Istanbul, Turkey A Crash Course on Microarray Data Analysis
2012 Sabanci University, Istanbul, Turkey Bayesian Pathway Analysis
2012 Istanbul University, Institute for Experimental Medicine, Istanbul, Turkey. HTBD Analysis within a BN Framework
2012 ICGEB Workshop Istanbul Computational Biology
2011 Inonu University, School of Medicine, Malatya, Turkey Contemporary Issues in and Applications of Computational Biology
2011 Yildiz Technical University, Bioengineering Days. Bioengineering Education in Turkey
2011 European Biotechnology Congress, Istanbul, Turkey Bayesian Network based pathway analysis of microarray data
2010 ICGEB Workshop South Africa Bioinformatics
2010 Bogazici University, Department of Electrical and Electronics Engineering, Istanbul, Turkey. Looking for Familiar Faces in the Old Neighborhood
2010 Istanbul Technical University, Program in Biomedical Engineering, Istanbul, Turkey From Sequence to Function to Networks: Analysis Issues in Bioinformatics
2010 Istanbul University, Institute for Experimental Medicine, Istanbul, Turkey
Similar talk is given at

Namik Kemal University

Kadir Has University

Fatih University

Bogazici University (Department of Computer Engineering)

Istanbul Bilgi University

Pakize Tarzi Laboratories,

all in Istanbul, Turkey
Sequence, Function, and Networks based Analysis Issues in Bioinformatics
2010 9th National Medical Genetics Congress, Istanbul Turkey Algorithms in Bioinformatics
2009 Michigan State University, East Lansing, MI USA Biomarker Discovery – Pregnancy Success
2009 University of Nebraska Medical Center, Lincoln/Omaha, NE USA Analysis and Applications of High-throughput Biological Data
2009 Middle East Technical University, Ankara, Turkey Bioinformatic Approaches for High-throughput Biological Data Analysis
2008 Bilgi University, Istanbul, Turkey Computational Approaches in DNA Sequence Analysis and Functional Genomics and Proteomics
2008 Halic University, Istanbul, Turkey Computational Approaches in DNA Sequence Analysis and Functional Genomics and Proteomics
2007 King Abdulaziz City for Science and Technology, Riyadh, KSA Challenges in Bioinformatics
2007 Sabanci University, Faculty of Engineering and Natural Sciences, Istanbul, Turkey Experimental Design and Analysis of High-Throughput Biological Data
2007 Bogazici University, Institute of Biomedical Engineering, Istanbul, Turkey DNA Sequence Analysis and Applications in Functional Genomics
2007 Izmir Institute of Technology, Izmir, Turkey Algorithmic and practical approaches to issues in Bioinformatics
2006 Yeditepe University, Department of Genetics and Bioengineering, Istanbul, Turkey Progress of Challenges in Bioinformatics: From Sequence to Function to Networks
2005 Boston University Bioinformatics Program Progress of Challenges in Bioinformatics: From Sequence to Function to Networks
2004 Bogazici University, Institute of Biomedical Engineering, Istanbul, Turkey A Seminar in Bioinformatics: Looking for Familiar Faces in the Neighborhood
2004 Sabanci University, Faculty of Engineering and Natural Sciences, Istanbul, Turkey. Challenges in Bioinformatics: DNA Sequence Analysis and Frontiers in Functional Genomics
2004 Koc University, Department of Chemical and Biological Engineering, Istanbul, Turkey. From Sequence to Function: Issues in Computational Biology
2004 MIT CSBI BioMicro Center Bioinformatics Core at BIDMC Genomics Center
2003 BIDMC Genomics Center Networks
2002 University of Nebraska-Lincoln, Department of Electrical Engineering An Information-theoretic Sequence Distance Measure with applications to Phylogeny Analysis
2002 BIDMC Genomics Center Invited Characterization of DNA Sequences
2001 3rd Georgia Tech-Emory International Conference on Bioinformatics. Atlanta, Georgia, USA. A New Approach to Sequence Assembly Using Divide and Conquer Algorithms
1999 University of Nebraska-Lincoln, Department of Electrical Engineering Issues in Joint Source Channel Coding
1998 IEEE International Conference on Acoustics, Speech, and Signal Processing. Seattle, Washington, USA. A Joint Source Channel Coder with Block Constraints
1997 Asilomar Conference on Circuits, Systems and Computers. Monterey, California, USA. A Compression Algorithm that Preserves NDVI and NDWI Values


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