Contents
| Institute | Unit | Year | Course Number | Course Name | Duration |
| University of Nebraska-Lincoln | Electrical and Computer Engineering | 2013-Present | ECEN 450/850 | Bioinformatics | Fall |
| ECEN 453/853 | Computational and Systems Biology | Spring | |||
| 2016-Present | ECEN 215 | Electronics and Circuits I | Fall | ||
| 2016 | ECEN 996 | Bayesian Networks | Spring | ||
| Istanbul Bilgi University | Genetics and Bioengineering | 2012-2013 | BIOE 241 | Fundamentals of Biostatistics and Experimental Design | Spring |
| 2013 | BIOE 346 | Microarrays | Spring | ||
| 2012 | BIOE 341 | Bioinformatics | Fall | ||
| College of Engineering | 2012 | ENGR 230 | Probability and Random Processes | Spring | |
| 2011-2012 | PHYS 100 | Physics I | Fall/Spring | ||
| 2011 | ENG 180 | Engineering and Sciences | Spring | ||
| 2010 | ENG 179 | Engineering in Society | Fall | ||
| Acibadem University | Medical School | 2010 | MED 106 | Medical Informatics | Spring |
| Sabanci University | Biological Sciences and Bioengineering | 2008 | BIO 512 | Advanced Computational Biology | Spring |
| Yeditepe University | Genetics and Bioengineering | 2007 | GBE 311 | Principles of Bioengineering | Spring |
| 2006 | GBE 313 | Experimental Bioengineering Lab | Fall | ||
| Northeastern University | Biology (Graduate Program in Bioinformatics) | 2005 | BIO G385 | Seminar in Bioinformaics | Fall |
| University of Nebraska-Lincoln | Electrical and Computer Engineering | 2000-2002 | ECEN 462/862 | Communication Systems | Fall |
| ECEN 464/864 | Digital Communication Systems | Spring |
Presentations
| Year | Venue | Title |
| 2021 | ICGEB International Seminar Programme, South Africa | Utilization of Bayesian Networks in Systems Biology |
| 2021 | Biotech Conference, Bogazici University | Omics Data Analysis in Systems Biology |
| 2020 | Mini-symposium on AI/machine Learning, Northwestern University | Network-based Approaches For Biological Data Analysis |
| 2020 | Istanbul Bilgi University, Department of Genetics and Bioengineering | Omic Data Analysis Using Network Science |
| 2019 | Electrical and Computer Engineering, UNL, Lincoln, NE USA | Bioinformatics @ ECE, External Advisory Board Meeting |
| 2019 | Northwestern University, Evanston, IL USA | Probabilistic Graph Models for Biological Data Analysis Using External Knowledge |
| 2018 | Keynote Speaker, UNL Plant Science Retreat Network | Analysis of Multiomic Data Using Probabilistic Graph Representations |
| 2014 | University of Nebraska Medical Center, Omaha, NE USA | Pathway Analysis of Biological Data using Bayesian Networks |
| 2012 | Bogazici University, Molecular Biology and Genetics Weekend, Istanbul, Turkey | Systems Biology |
| 2012 | ITU Biotech, Istanbul, Turkey | Bioinformatics |
| 2012 | DONE Genetics and Bioinformatics, Istanbul, Turkey | A Crash Course on Microarray Data Analysis |
| 2012 | Sabanci University, Istanbul, Turkey | Bayesian Pathway Analysis |
| 2012 | Istanbul University, Institute for Experimental Medicine, Istanbul, Turkey. | HTBD Analysis within a BN Framework |
| 2012 | ICGEB Workshop Istanbul | Computational Biology |
| 2011 | Inonu University, School of Medicine, Malatya, Turkey | Contemporary Issues in and Applications of Computational Biology |
| 2011 | Yildiz Technical University, Bioengineering Days. | Bioengineering Education in Turkey |
| 2011 | European Biotechnology Congress, Istanbul, Turkey | Bayesian Network based pathway analysis of microarray data |
| 2010 | ICGEB Workshop South Africa | Bioinformatics |
| 2010 | Bogazici University, Department of Electrical and Electronics Engineering, Istanbul, Turkey. | Looking for Familiar Faces in the Old Neighborhood |
| 2010 | Istanbul Technical University, Program in Biomedical Engineering, Istanbul, Turkey | From Sequence to Function to Networks: Analysis Issues in Bioinformatics |
| 2010 |
Istanbul University, Institute for Experimental Medicine, Istanbul, Turkey
Similar talk is given at Namik Kemal University Kadir Has University Fatih University Bogazici University (Department of Computer Engineering) Istanbul Bilgi University Pakize Tarzi Laboratories, all in Istanbul, Turkey |
Sequence, Function, and Networks based Analysis Issues in Bioinformatics |
| 2010 | 9th National Medical Genetics Congress, Istanbul Turkey | Algorithms in Bioinformatics |
| 2009 | Michigan State University, East Lansing, MI USA | Biomarker Discovery – Pregnancy Success |
| 2009 | University of Nebraska Medical Center, Lincoln/Omaha, NE USA | Analysis and Applications of High-throughput Biological Data |
| 2009 | Middle East Technical University, Ankara, Turkey | Bioinformatic Approaches for High-throughput Biological Data Analysis |
| 2008 | Bilgi University, Istanbul, Turkey | Computational Approaches in DNA Sequence Analysis and Functional Genomics and Proteomics |
| 2008 | Halic University, Istanbul, Turkey | Computational Approaches in DNA Sequence Analysis and Functional Genomics and Proteomics |
| 2007 | King Abdulaziz City for Science and Technology, Riyadh, KSA | Challenges in Bioinformatics |
| 2007 | Sabanci University, Faculty of Engineering and Natural Sciences, Istanbul, Turkey | Experimental Design and Analysis of High-Throughput Biological Data |
| 2007 | Bogazici University, Institute of Biomedical Engineering, Istanbul, Turkey | DNA Sequence Analysis and Applications in Functional Genomics |
| 2007 | Izmir Institute of Technology, Izmir, Turkey | Algorithmic and practical approaches to issues in Bioinformatics |
| 2006 | Yeditepe University, Department of Genetics and Bioengineering, Istanbul, Turkey | Progress of Challenges in Bioinformatics: From Sequence to Function to Networks |
| 2005 | Boston University Bioinformatics Program | Progress of Challenges in Bioinformatics: From Sequence to Function to Networks |
| 2004 | Bogazici University, Institute of Biomedical Engineering, Istanbul, Turkey | A Seminar in Bioinformatics: Looking for Familiar Faces in the Neighborhood |
| 2004 | Sabanci University, Faculty of Engineering and Natural Sciences, Istanbul, Turkey. | Challenges in Bioinformatics: DNA Sequence Analysis and Frontiers in Functional Genomics |
| 2004 | Koc University, Department of Chemical and Biological Engineering, Istanbul, Turkey. | From Sequence to Function: Issues in Computational Biology |
| 2004 | MIT CSBI BioMicro Center | Bioinformatics Core at BIDMC Genomics Center |
| 2003 | BIDMC Genomics Center | Networks |
| 2002 | University of Nebraska-Lincoln, Department of Electrical Engineering | An Information-theoretic Sequence Distance Measure with applications to Phylogeny Analysis |
| 2002 | BIDMC Genomics Center Invited | Characterization of DNA Sequences |
| 2001 | 3rd Georgia Tech-Emory International Conference on Bioinformatics. Atlanta, Georgia, USA. | A New Approach to Sequence Assembly Using Divide and Conquer Algorithms |
| 1999 | University of Nebraska-Lincoln, Department of Electrical Engineering | Issues in Joint Source Channel Coding |
| 1998 | IEEE International Conference on Acoustics, Speech, and Signal Processing. Seattle, Washington, USA. | A Joint Source Channel Coder with Block Constraints |
| 1997 | Asilomar Conference on Circuits, Systems and Computers. Monterey, California, USA. | A Compression Algorithm that Preserves NDVI and NDWI Values |